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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139737097_139739365_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139737097 - 139739365
Intron Length:
2269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TTTTGGTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACGTCAT
U12 Branch Point Sequence:
TTTTGGTCCACA
Flanking Amino Acid:
GEVVWYLGSNRMLSVNFGYN
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
71.9
39.5
Major BPS
63.4
0.33
1.2
65.3
41.5
Major PPT
78.7
0.64
0.9
72.5
37.8
Minor 5ss
36.1
-1.6
2.9
48.1
41.6
Minor BPS
42.5
-0.6
2.8
67.11
45.4

Associated Gene:

Gene:
ATP8A2
Ensembl Gene ID:
ENSAPLG00000009563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045064
139479401 - 139771736
292336
ENSAPLT00000023946
139479401 - 139762617
283217
ENSAPLT00000018501
139479369 - 139796317
316949
ENSAPLT00000009982
139479401 - 139796317
316917
ENSAPLT00000047493
139479401 - 139796317
316917