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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139741592_139748597_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139741592 - 139748597
Intron Length:
7006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGGTCTGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TATTTTTTGACA
Flanking Amino Acid:
GMWQNIIWKEGLSQTASLQS
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
74.5
0.55
1
69.4
41.7
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
74
0.75
1.1
78.4
31.4

Associated Gene:

Gene:
ATP8A2
Ensembl Gene ID:
ENSAPLG00000009563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023946
139479401 - 139762617
283217