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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139746781_139748597_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139746781 - 139748597
Intron Length:
1817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTGATTCACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
CTGCCCCTGATT
Flanking Amino Acid:
GMWQNIIWKEVAVGDIVKVT
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
65
0.37
1.3
76.1
38
Major PPT
66.9
0.38
1
58.7
41.6
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
52.3
0.15
1.7
69.16
42.2

Associated Gene:

Gene:
ATP8A2
Ensembl Gene ID:
ENSAPLG00000009563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047493
139479401 - 139796317
316917
ENSAPLT00000045064
139479401 - 139771736
292336
ENSAPLT00000018501
139479369 - 139796317
316949
ENSAPLT00000009982
139479401 - 139796317
316917