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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139748639_139750148_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139748639 - 139750148
Intron Length:
1510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGACTA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTCTGATCT
Flanking Amino Acid:
DSAVNKKKTLVLRNGMWQNI
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
80.8
33.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.4
0.89
0.7
81.6
35.5
Minor 5ss
35.5
-1.6
3.2
47.7
47.7
Minor BPS
62.2
0.46
1.7
81.57
39.7

Associated Gene:

Gene:
ATP8A2
Ensembl Gene ID:
ENSAPLG00000009563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023946
139479401 - 139762617
283217
ENSAPLT00000018501
139479369 - 139796317
316949
ENSAPLT00000009982
139479401 - 139796317
316917
ENSAPLT00000047493
139479401 - 139796317
316917
ENSAPLT00000045064
139479401 - 139771736
292336