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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139751852_139762420_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
139751852 - 139762420
Intron Length:
10569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGGA
5'SS Class:
major
3'SS Sequence:
TTTTAACCTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TATCTTTTAACC
Flanking Amino Acid:
QQSKFRDNWVSTAKYSVVTF
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
64
42.4
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
81.6
0.71
0.8
75.1
34.6
Minor 5ss
27.2
-2.6
3.6
37.6
47.2
Minor BPS
73.1
0.71
1.1
76.61
32.8

Associated Gene:

Gene:
ATP8A2
Ensembl Gene ID:
ENSAPLG00000009563
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045064
139479401 - 139771736
292336
ENSAPLT00000023946
139479401 - 139762617
283217
ENSAPLT00000018501
139479369 - 139796317
316949
ENSAPLT00000009982
139479401 - 139796317
316917
ENSAPLT00000047493
139479401 - 139796317
316917