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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139803271_139805972_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
139803271 - 139805972
Intron Length:
2702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGAAT
5'SS Class:
major
3'SS Sequence:
ACTTTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
TATGTGCTAATG
Flanking Amino Acid:
FRTGYLELSYSISSTSWCE*
Intron Amino Acid Position:
223

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.3
0.67
1
74.7
37
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
86.5
0.82
0.7
81.1
30.1
Minor 5ss
27.1
-2.6
3.3
38.2
47
Minor BPS
42.9
-0.6
2.3
52.29
42.9

Associated Gene:

Gene:
RNF6
Ensembl Gene ID:
ENSAPLG00000009544
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042425
139801951 - 139814814
12864