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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139809669_139810400_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139809669 - 139810400
Intron Length:
732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAACAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
ATGTTTACAATT
Flanking Amino Acid:
NREGEGRAVGDSDVLGENSN
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
71.3
40.5
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
85.8
0.81
0.7
84.9
30
Minor 5ss
38.1
-1.3
3
49.1
46.7
Minor BPS
48.1
-0
1.7
66.77
38.6

Associated Gene:

Gene:
RNF6
Ensembl Gene ID:
ENSAPLG00000009544
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042425
139801951 - 139814814
12864
ENSAPLT00000030978
139807121 - 139814814
7694
ENSAPLT00000009932
139807121 - 139814000
6880