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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139810509_139811074_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139810509 - 139811074
Intron Length:
566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATGG
5'SS Class:
strong_major
3'SS Sequence:
AAATTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
TCTTATCTAACG
Flanking Amino Acid:
MRDRNLLGTPGEITAEELQQ
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
65.2
41.6
Major BPS
79
0.72
1
80.3
31.7
Major PPT
80.7
0.69
0.9
77.8
40.3
Minor 5ss
37.5
-1.4
3
44.3
45.4
Minor BPS
54
-0
1.9
64.85
43

Associated Gene:

Gene:
RNF6
Ensembl Gene ID:
ENSAPLG00000009544
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030978
139807121 - 139814814
7694
ENSAPLT00000009932
139807121 - 139814000
6880
ENSAPLT00000042425
139801951 - 139814814
12864