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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139823643_139835297_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
139823643 - 139835297
Intron Length:
11655

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTAAC
5'SS Class:
major
3'SS Sequence:
TCTTCTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAA
Flanking Amino Acid:
NNWLLETVRSRKDDKDYALK
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.2
73.5
37.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.4
0.84
0.7
83
25.5
Minor 5ss
31
-2.2
2.8
36.5
40.6
Minor BPS
76.9
0.84
1.2
83.98
29.3

Associated Gene:

Gene:
CDK8
Ensembl Gene ID:
ENSAPLG00000009252
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009658
139823605 - 139890253
66649