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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139835374_139845758_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139835374 - 139845758
Intron Length:
10385

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
CTTTATTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
CTTTCTTTATTT
Flanking Amino Acid:
ISMSACREIALLRELKHPNV
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
75.5
34.3
Major BPS
79
0.72
1
78.4
31.2
Major PPT
89.2
0.88
0.7
84.2
30.3
Minor 5ss
38.2
-1.3
2.8
51.4
39.2
Minor BPS
69.3
0.68
1.6
83.14
39

Associated Gene:

Gene:
CDK8
Ensembl Gene ID:
ENSAPLG00000009252
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029821
139817044 - 139871886
54843
ENSAPLT00000027959
139817044 - 139861869
44826
ENSAPLT00000009658
139823605 - 139890253
66649
ENSAPLT00000044659
139817044 - 139890253
73210