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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139848675_139861746_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139848675 - 139861746
Intron Length:
13072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TTGTTTTCAATA
Flanking Amino Acid:
HANWVLHRDLLKIFAVFKEN
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
76.6
0.6
0.9
74.3
35.3
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
62
0.37
1.5
70.53
36.5

Associated Gene:

Gene:
CDK8
Ensembl Gene ID:
ENSAPLG00000009252
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027959
139817044 - 139861869
44826