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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139848675_139869020_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
139848675 - 139869020
Intron Length:
20346

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTTTCCACA
Flanking Amino Acid:
HANWVLHRDLKPANILVMGE
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
91.4
0.93
0.6
87.9
22.3
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
55.3
0.16
2
74.67
37.4

Associated Gene:

Gene:
CDK8
Ensembl Gene ID:
ENSAPLG00000009252
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044659
139817044 - 139890253
73210
ENSAPLT00000009658
139823605 - 139890253
66649