About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139876422_139877472_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
139876422 - 139877472
Intron Length:
1051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTAAGTCTG
5'SS Class:
major
3'SS Sequence:
TTTGCTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TGCATATTAAAA
Flanking Amino Acid:
STLMKDFRRNTYTNCSLIKY
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.3
72.7
44.5
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
84.3
0.77
0.8
77.4
36.9
Minor 5ss
39.2
-1.2
3
49.6
39.9
Minor BPS
48.9
-0
1.7
59.2
39.9

Associated Gene:

Gene:
CDK8
Ensembl Gene ID:
ENSAPLG00000009252
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044659
139817044 - 139890253
73210
ENSAPLT00000009658
139823605 - 139890253
66649