Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139877546_139882637_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

139877546 - 139882637

Intron Length:

5092

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TTG|GTAAGTTCC

5'SS Class:

strong_major

3'SS Sequence:

TAATTTTGTTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTATCTTTAATT

Flanking Amino Acid:

VKPDSKAFHLLQKLLTMDPI

Intron Amino Acid Position:

282

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.9

77.6

31.4

Major BPS

96.5

1.15

0.6

34.2

Major PPT

74.5

0.55

41.1

Minor 5ss

41.6

-0.9

2.7

39.8

Minor BPS

84.8

1.17

0.9

92.65

29.3

Associated Gene:

Gene:

CDK8

Ensembl Gene ID:

ENSAPLG00000009252

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044659

139817044 - 139890253

73210

ENSAPLT00000009658

139823605 - 139890253

66649