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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139974645_139977154_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
139974645 - 139977154
Intron Length:
2510

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTAAT
5'SS Class:
major
3'SS Sequence:
CTGTTTGTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
CTGTTTGTAACA
Flanking Amino Acid:
VTQLDSTVEEVSLQDINMKK
Intron Amino Acid Position:
90

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
77.9
38.6
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
73.2
0.52
1
69
40.8
Minor 5ss
35.6
-1.6
3.1
42.1
44.8
Minor BPS
52.7
0.08
2
65.7
41.8

Associated Gene:

Gene:
WASF3
Ensembl Gene ID:
ENSAPLG00000005025
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017551
139928728 - 139990109
61382
ENSAPLT00000005184
139967067 - 139990109
23043
ENSAPLT00000044971
139928728 - 139990109
61382