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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_139987055_139987903_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
139987055 - 139987903
Intron Length:
849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTTTGTCAT
5'SS Class:
major
3'SS Sequence:
ACTTTAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTACTTTAATT
Flanking Amino Acid:
GSMKEDKMPKGSHASDVTDY
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66
0.38
1.2
62.7
43.2
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
74.6
0.55
0.9
71.7
37.7
Minor 5ss
37.9
-1.4
2.7
43
44
Minor BPS
81.9
1.08
1
92.54
29.6

Associated Gene:

Gene:
WASF3
Ensembl Gene ID:
ENSAPLG00000005025
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017551
139928728 - 139990109
61382