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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140141904_140143927_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140141904 - 140143927
Intron Length:
2024

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTTTTTAATT
Flanking Amino Acid:
DLVAVVVHCGSGPNRGHYIA
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
76.3
32.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
92.7
0.96
0.7
87.8
29.3
Minor 5ss
33.8
-1.8
2.8
42
44.2
Minor BPS
84.9
1.17
0.8
94.97
24.6

Associated Gene:

Gene:
USP12
Ensembl Gene ID:
ENSAPLG00000005359
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005546
140141780 - 140162167
20388