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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14015602_14016476_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14015602 - 14016476
Intron Length:
875

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAATGCT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTTATTAACA
Flanking Amino Acid:
DDGDNFYVIDRGTYDIYVKC
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
77.3
30.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
79.1
0.65
0.9
74.7
38.5
Minor 5ss
29.2
-2.4
3.2
41.3
45.2
Minor BPS
73.8
0.74
1.5
82.85
30.8

Associated Gene:

Gene:
PRKAR2B
Ensembl Gene ID:
ENSAPLG00000006955
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024526
13941786 - 14022137
80352
ENSAPLT00000007239
13941786 - 14022137
80352