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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140156291_140162134_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140156291 - 140162134
Intron Length:
5844

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TCTTCTTTTATA
Flanking Amino Acid:
VNEHYFGLVNFGNTCYCNSV
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
84.3
27.2
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
87.7
0.85
0.6
83.7
24.6
Minor 5ss
47.2
-0.3
2.8
66.2
38.1
Minor BPS
66.7
0.52
1.6
74.49
37.5

Associated Gene:

Gene:
USP12
Ensembl Gene ID:
ENSAPLG00000005359
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005546
140141780 - 140162167
20388