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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140186448_140187453_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
5UTR
Intron Coordinates:
140186448 - 140187453
Intron Length:
1006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCGCCG
5'SS Class:
weak_major
3'SS Sequence:
TTCATTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TCTTCATTCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59
0.21
1.2
45.1
44.4
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
88.5
0.87
0.7
84
30.8
Minor 5ss
30.1
-2.3
3.4
39.4
46
Minor BPS
59.7
0.38
2
80.74
41.5

Associated Gene:

Gene:
RPL21
Ensembl Gene ID:
ENSAPLG00000005641
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038307
140186318 - 140191938
5621