Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140189230_140189878_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

140189230 - 140189878

Intron Length:

649

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTAAT

5'SS Class:

strong_major

3'SS Sequence:

TTTCTTTTCTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTAAAA

U12 Branch Point Sequence:

AAAACCTGATTT

Flanking Amino Acid:

AVGVIVNKKVKGKILAKRIN

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.6

0.91

0.8

89.8

22.2

Major BPS

64.3

0.36

71.3

30.3

Major PPT

87.8

0.85

0.6

88.4

21.1

Minor 5ss

39.1

-1.2

2.8

51.7

39.1

Minor BPS

48.2

-0

1.7

62.76

40.8

Associated Gene:

Gene:

RPL21

Ensembl Gene ID:

ENSAPLG00000005641

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038307

140186318 - 140191938

5621

ENSAPLT00000005851

140187454 - 140280747

93294