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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140190030_140190818_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140190030 - 140190818
Intron Length:
789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTTACA
Flanking Amino Acid:
KGIWVQLKRQPAPPREAHFV
Intron Amino Acid Position:
132

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
77.9
31
Major BPS
100
1.24
0.5
100
0
Major PPT
90
0.9
0.7
84.6
29.1
Minor 5ss
42.6
-0.8
3.1
59.6
45
Minor BPS
69.6
0.61
1.9
85.1
33.8

Associated Gene:

Gene:
RPL21
Ensembl Gene ID:
ENSAPLG00000005641
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038307
140186318 - 140191938
5621