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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140195425_140195538_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140195425 - 140195538
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
CCCTCTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TCCGTCCTAACG
Flanking Amino Acid:
VLGARGVGKSALIVRFLTKR
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.3
34.6
Major BPS
72
0.55
1
71.8
31.4
Major PPT
80.7
0.69
0.7
72.1
32.5
Minor 5ss
30.4
-2.2
3.2
42.4
44.3
Minor BPS
49.1
-0.2
1.9
54.84
46.5

Associated Gene:

Gene:
RASL11A
Ensembl Gene ID:
ENSAPLG00000017444
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037772
140194395 - 140196656
2262