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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14020255_14020406_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14020255 - 14020406
Intron Length:
152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCATATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TCTTTTTCCACT
Flanking Amino Acid:
GEVRIIMTRKGKPDVEENGA
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
74
36.4
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
80.9
0.69
0.9
77.6
35
Minor 5ss
33
-1.9
3.3
47.4
48
Minor BPS
51.9
0.14
2
74.97
42.5

Associated Gene:

Gene:
PRKAR2B
Ensembl Gene ID:
ENSAPLG00000006955
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024526
13941786 - 14022137
80352
ENSAPLT00000007239
13941786 - 14022137
80352