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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140256495_140256569_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140256495 - 140256569
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTATC
5'SS Class:
strong_major
3'SS Sequence:
TTTGCAACTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TGAAACTAAACT
Flanking Amino Acid:
PGCGKVFAMKQSLARHMVDH
Intron Amino Acid Position:
43

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.8
87
27.8
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
70.8
0.47
0.9
64.4
36.7
Minor 5ss
46.4
-0.4
2.5
62.6
42.2
Minor BPS
52.3
0.15
1.9
71.9
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005957
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006175
140255601 - 140257043
1443