About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140256630_140256881_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140256630 - 140256881
Intron Length:
252

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTATTTCTGCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AATTCTGTATTT
Flanking Amino Acid:
DPEKRKLKLKSKRSRPKRSL
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.9
81.6
33.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.7
0.56
1
70.3
41
Minor 5ss
43.6
-0.7
2.9
58.5
40.3
Minor BPS
48.7
-0
2.2
71.01
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005957
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006175
140255601 - 140257043
1443