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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140258348_140259541_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140258348 - 140259541
Intron Length:
1194

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATACA
5'SS Class:
major
3'SS Sequence:
CTGTTTTAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TCTGTTTTAAAC
Flanking Amino Acid:
AEKKKASSKAGLVQKELSFS
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
74.2
36.1
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
72.8
0.51
1
69.8
39.5
Minor 5ss
34.3
-1.8
2.9
43.6
43.5
Minor BPS
59.5
0.28
1.5
66.32
39.9

Associated Gene:

Gene:
MTIF3
Ensembl Gene ID:
ENSAPLG00000006117
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006332
140257081 - 140260952
3872