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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140260006_140260710_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140260006 - 140260710
Intron Length:
705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTAAC
U12 Branch Point Sequence:
ATGAAGTTAACT
Flanking Amino Acid:
CSLHLKHVFSIMTTFCVMKL
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
82.8
29.1
Major BPS
65.7
0.39
1.1
67.4
36.7
Major PPT
81.8
0.72
0.7
80.1
25.2
Minor 5ss
37.6
-1.4
3.1
54.1
43
Minor BPS
49.5
0.04
2.2
72.27
44.2

Associated Gene:

Gene:
MTIF3
Ensembl Gene ID:
ENSAPLG00000006117
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006332
140257081 - 140260952
3872