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Intron Name: Anas_platyrhynchos_platyrhynchos_1_140297646_140299301_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

140297646 - 140299301

Intron Length:

1656

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGGCTT

5'SS Class:

strong_major

3'SS Sequence:

CACCTCTCAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

GTGTTCTTATTT

Flanking Amino Acid:

CLARDGRIKRGDVLLNINGI

Intron Amino Acid Position:

521

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

73.4

43.3

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

67.2

0.39

0.9

61.7

33.2

Minor 5ss

35.3

-1.7

3.8

55.3

48.9

Minor BPS

63.1

0.49

1.6

75.91

41.4

Associated Gene:

Gene:

LNX2

Ensembl Gene ID:

ENSAPLG00000005445

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038736

140292699 - 140332734

40036

ENSAPLT00000030310

140292699 - 140320577

27879

ENSAPLT00000005629

140292699 - 140327724

35026