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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140299480_140301576_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140299480 - 140301576
Intron Length:
2097

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTGTT
5'SS Class:
major
3'SS Sequence:
TCTTGTCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TAAGTTTTAACA
Flanking Amino Acid:
LFHSRPNSHKDLSQCVTCQE
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1.2
77.3
37.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
70.7
0.47
1
66.4
38.7
Minor 5ss
33.6
-1.9
3.5
49.5
46.8
Minor BPS
64.8
0.46
1.3
68.62
37.8

Associated Gene:

Gene:
LNX2
Ensembl Gene ID:
ENSAPLG00000005445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030310
140292699 - 140320577
27879
ENSAPLT00000005629
140292699 - 140327724
35026
ENSAPLT00000038736
140292699 - 140332734
40036