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Intron Name: Anas_platyrhynchos_platyrhynchos_1_140301724_140303260_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

140301724 - 140303260

Intron Length:

1537

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATTGC

5'SS Class:

strong_major

3'SS Sequence:

ATATATTTGACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTATAT

U12 Branch Point Sequence:

ACTTCTTTATTT

Flanking Amino Acid:

TPELAAQVIQASGERVNLII

Intron Amino Acid Position:

413

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.6

0.84

0.9

75.6

35.3

Major BPS

79.2

0.73

75.3

39.4

Major PPT

0.45

1.1

65.4

44.5

Minor 5ss

39.9

-1.1

2.9

44.2

Minor BPS

65.5

0.56

1.5

77.64

39.7

Associated Gene:

Gene:

LNX2

Ensembl Gene ID:

ENSAPLG00000005445

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038736

140292699 - 140332734

40036

ENSAPLT00000030310

140292699 - 140320577

27879

ENSAPLT00000005629

140292699 - 140327724

35026