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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140303660_140306931_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
140303660 - 140306931
Intron Length:
3272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGGAAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATATTCTGATCT
Flanking Amino Acid:
RLLAGDQILQVNSFDISNVS
Intron Amino Acid Position:
280

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
74.1
35.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
100
1.12
0.4
100
0
Minor 5ss
41.7
-0.9
3.2
56.9
42.1
Minor BPS
57.7
0.32
1.7
76.08
40.2

Associated Gene:

Gene:
LNX2
Ensembl Gene ID:
ENSAPLG00000005445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030310
140292699 - 140320577
27879
ENSAPLT00000005629
140292699 - 140327724
35026
ENSAPLT00000038736
140292699 - 140332734
40036