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Intron Name: Anas_platyrhynchos_platyrhynchos_1_140308198_140316515_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

140308198 - 140316515

Intron Length:

8318

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGCCAT

5'SS Class:

strong_major

3'SS Sequence:

GTTTTCTTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTAAAT

U12 Branch Point Sequence:

GTTTTCTTCACA

Flanking Amino Acid:

RCDLAAHLKNRCPGASHRRV

Intron Amino Acid Position:

134

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.83

0.9

38.4

Major BPS

67.2

0.43

1.2

73.3

39.1

Major PPT

85.1

0.79

0.8

32.1

Minor 5ss

34.1

-1.8

3.2

46.7

48.6

Minor BPS

69.5

0.61

1.7

79.59

36.6

Associated Gene:

Gene:

LNX2

Ensembl Gene ID:

ENSAPLG00000005445

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038736

140292699 - 140332734

40036

ENSAPLT00000030310

140292699 - 140320577

27879

ENSAPLT00000005629

140292699 - 140327724

35026