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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14030855_14034351_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
14030855 - 14034351
Intron Length:
3497

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TGTCTCTTTGAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAA
U12 Branch Point Sequence:
AAGTATTTAACC
Flanking Amino Acid:
MATGLSDTLEHPNMV
Intron Amino Acid Position:
6

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
76
34.9
Major BPS
79.5
0.73
0.9
70
36.9
Major PPT
74.5
0.55
1
75.3
33.4
Minor 5ss
34.1
-1.8
3.1
41.9
38.9
Minor BPS
63.3
0.4
1.5
67
38.3

Associated Gene:

Gene:
HBP1
Ensembl Gene ID:
ENSAPLG00000007110
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007396
14030705 - 14047361
16657