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Intron Name: Anas_platyrhynchos_platyrhynchos_1_140317014_140320442_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

140317014 - 140320442

Intron Length:

3429

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTACGTTGC

5'SS Class:

major

3'SS Sequence:

TTATTTGCTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ATTTCTTTATTT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.7

0.61

1.1

64.3

43.1

Major BPS

96.5

1.15

0.6

34.2

Major PPT

82.3

0.73

0.9

77.5

36.6

Minor 5ss

-1.2

43.8

Minor BPS

71.8

0.76

1.5

85.98

34.4

Associated Gene:

Gene:

LNX2

Ensembl Gene ID:

ENSAPLG00000005445

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030310

140292699 - 140320577

27879