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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140317014_140332618_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
140317014 - 140332618
Intron Length:
15605

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTGG
5'SS Class:
major
3'SS Sequence:
TTATTTGCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
ATTTCTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
62.3
44.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.3
0.73
0.9
77.5
36.6
Minor 5ss
49.3
-0
2.5
64.5
46.9
Minor BPS
71.8
0.76
1.5
85.98
34.4

Associated Gene:

Gene:
LNX2
Ensembl Gene ID:
ENSAPLG00000005445
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038736
140292699 - 140332734
40036