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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14035918_14037109_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14035918 - 14037109
Intron Length:
1192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGACA
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATATTTTAAAAT
Flanking Amino Acid:
SPLMQCSFYNRSSPVHIIAT
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.5
0.41
1.2
63.4
42.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
89
0.88
0.6
85.4
21.8
Minor 5ss
37
-1.5
3.3
49.9
46.1
Minor BPS
53.9
0.2
1.7
71.8
39.2

Associated Gene:

Gene:
HBP1
Ensembl Gene ID:
ENSAPLG00000007110
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021052
14033995 - 14047361
13367
ENSAPLT00000007396
14030705 - 14047361
16657