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Intron Name: Anas_platyrhynchos_platyrhynchos_1_14038116_14038228_F

Intron Information:

Intron Rank:

Intron Class:

major_hybrid

Intron Phase:

Intron Coordinates:

14038116 - 14038228

Intron Length:

113

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAATAAC

5'SS Class:

strong_major

3'SS Sequence:

AAAAATGTATTAG|G

3'SS Class:

major_hybrid

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTCCTTAAAA

Flanking Amino Acid:

PSTVWHCFLKGSRLCFHKGR

Intron Amino Acid Position:

230

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.9

0.89

0.9

83.8

27.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

49.6

-0

1.1

45.2

45.4

Minor 5ss

35.4

-1.7

2.8

44.9

43.2

Minor BPS

1.19

1.1

93.09

25.3

Associated Gene:

Gene:

HBP1

Ensembl Gene ID:

ENSAPLG00000007110

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000021052

14033995 - 14047361

13367

ENSAPLT00000007396

14030705 - 14047361

16657