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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140415135_140416714_R

Intron Information:

Intron Rank:
140743
Intron Class:
major
Intron Phase:
Intron Coordinates:
140415135 - 140416714
Intron Length:
1580

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCCTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAG
U12 Branch Point Sequence:
GATTTCAGACAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.8
78.2
31.9
Major BPS
67.2
0.43
1.5
77.4
37.3
Major PPT
85.7
0.8
0.8
77.2
37
Minor 5ss
33.9
-1.8
3.3
47.6
48
Minor BPS
42.8
-0.4
1.9
61.17
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023063
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020480
140415049 - 140417763
2715