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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140443441_140445827_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140443441 - 140445827
Intron Length:
2387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACCCC
5'SS Class:
major
3'SS Sequence:
CCCCTCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
CGGGGCTGACTG
Flanking Amino Acid:
KSHAWKGQWAGGSYVVEPEE
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
63.1
41.8
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
77.2
0.61
0.8
68.4
31.9
Minor 5ss
38.5
-1.3
3.1
51.7
45
Minor BPS
36.1
-1.1
2
31.85
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026245
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032540
140442919 - 140446842
3924