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Intron Name: Anas_platyrhynchos_platyrhynchos_1_140459715_140460370_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

140459715 - 140460370

Intron Length:

656

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGTGTGCT

5'SS Class:

strong_major

3'SS Sequence:

CTCTCCTCGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTAAC

U12 Branch Point Sequence:

ACCCCCCTAACT

Flanking Amino Acid:

ASSLGLSERQVKIWFQNRRA

Intron Amino Acid Position:

200

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.1

0.8

0.9

76.6

31.9

Major BPS

59.7

0.24

1.1

61.2

32.6

Major PPT

72.5

0.51

0.9

31.5

Minor 5ss

-1.6

3.2

49.9

46.5

Minor BPS

59.2

0.37

1.7

72.69

43.8

Associated Gene:

Gene:

CDX2

Ensembl Gene ID:

ENSAPLG00000020255

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025462

140459547 - 140463231

3685