Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140460517_140462740_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

140460517 - 140462740

Intron Length:

2224

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGCGGG

5'SS Class:

major

3'SS Sequence:

TTGTTCCCCGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCCCAA

U12 Branch Point Sequence:

GCTTTCCCAACC

Flanking Amino Acid:

KPAQPPLSSQVKTRTKDKYR

Intron Amino Acid Position:

151

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.9

0.63

1.1

47.1

Major BPS

63.1

0.33

1.2

72.7

34.3

Major PPT

79.1

0.65

0.8

74.1

31.1

Minor 5ss

35.3

-1.7

3.3

38.2

46.7

Minor BPS

49.9

-0

1.9

63.86

41.4

Associated Gene:

Gene:

CDX2

Ensembl Gene ID:

ENSAPLG00000020255

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025462

140459547 - 140463231

3685