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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140483512_140484513_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140483512 - 140484513
Intron Length:
1002

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAATAA
5'SS Class:
major
3'SS Sequence:
TGTACTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GTTGTTTTGATG
Flanking Amino Acid:
SVQVAVKMLKEKSDTSEKDA
Intron Amino Acid Position:
660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
67.4
34
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
83.7
0.76
0.8
80.9
36.6
Minor 5ss
35.5
-1.6
3.3
47
48.4
Minor BPS
53.3
-0
1.4
57.67
38.9

Associated Gene:

Gene:
FLT3
Ensembl Gene ID:
ENSAPLG00000005989
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041730
140472130 - 140516164
44035
ENSAPLT00000037706
140472130 - 140516164
44035
ENSAPLT00000006238
140472130 - 140516164
44035