About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140485052_140486816_R


Intron Information:

Intron Rank:
12

Intron Class:
major

Intron Phase:
1

Intron Coordinates:
140485052 - 140486816

Intron Length:
1765

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTACCATTA

5'SS Class:
major

3'SS Sequence:
GTCTCTTTTAAAG|T

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TCTAAAT

U12 Branch Point Sequence:
TCTCTTTTAAAG

Flanking Amino Acid:
ACEKSFINLSVAGAVSSPPD

Intron Amino Acid Position:
543

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
70
0.47
1.2
68.9
38.8

Major BPS
69.8
0.49
1.1
75.5
35.2

Major PPT
73.6
0.53
1
74
34.5

Minor 5ss
46
-0.4
3.1
65.2
46

Minor BPS
58.8
0.14
1.5
61.29
40.8

Associated Gene:

Gene:
FLT3

Ensembl Gene ID:

Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

140472130 - 140516164
44035

140472130 - 140516164
44035

140472130 - 140516164
44035