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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_14049192_14057946_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
14049192 - 14057946
Intron Length:
8755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAAAATC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ATTGCTTTAACT
Flanking Amino Acid:
PSEKDRLALIRGALEAYVQS
Intron Amino Acid Position:
900

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1
72.6
36.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
37.9
-1.4
3.2
53.2
43.8
Minor BPS
79.6
1.01
1.2
90.07
34.1

Associated Gene:

Gene:
COG5
Ensembl Gene ID:
ENSAPLG00000007291
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007578
14048812 - 14230123
181312