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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140493958_140498780_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140493958 - 140498780
Intron Length:
4823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAATTCCA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATCACAATA
Flanking Amino Acid:
PNQTALVTVLEKGFINITDS
Intron Amino Acid Position:
355

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
1
73.5
37.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
89
0.88
0.6
87.5
22.8
Minor 5ss
34.6
-1.8
2.8
42.9
43.8
Minor BPS
50.6
0.02
1.8
69.18
37

Associated Gene:

Gene:
FLT3
Ensembl Gene ID:
ENSAPLG00000005989
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041730
140472130 - 140516164
44035
ENSAPLT00000037706
140472130 - 140516164
44035
ENSAPLT00000006238
140472130 - 140516164
44035