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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140500921_140503067_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140500921 - 140503067
Intron Length:
2147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTATG
5'SS Class:
major
3'SS Sequence:
TTATTTTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATTTTTAACA
Flanking Amino Acid:
YTIIVPVFIRNKPGKPYFKR
Intron Amino Acid Position:
167

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
75.9
39.9
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.9
0.76
0.9
81.2
35
Minor 5ss
41.5
-0.9
2.8
57.1
41.1
Minor BPS
80.5
0.95
1
83.59
30.1

Associated Gene:

Gene:
FLT3
Ensembl Gene ID:
ENSAPLG00000005989
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041730
140472130 - 140516164
44035
ENSAPLT00000037706
140472130 - 140516164
44035
ENSAPLT00000006238
140472130 - 140516164
44035