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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140503184_140503990_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
140503184 - 140503990
Intron Length:
807

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTCTCTTTTACA
Flanking Amino Acid:
ACKPSLDSENRYVTSLAFSQ
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.2
30.8
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
91.6
0.94
0.6
87
23.6
Minor 5ss
33.5
-1.9
2.9
40.7
45.5
Minor BPS
70.7
0.65
1.6
78.99
37.5

Associated Gene:

Gene:
FLT3
Ensembl Gene ID:
ENSAPLG00000005989
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006238
140472130 - 140516164
44035
ENSAPLT00000041730
140472130 - 140516164
44035
ENSAPLT00000037706
140472130 - 140516164
44035