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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140506278_140516109_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140506278 - 140516109
Intron Length:
9832

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TGTTTCCTATTT
Flanking Amino Acid:
HPSGTPLWLPVLVMTAITFT
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.1
39.5
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
88.4
0.86
0.7
83.2
32
Minor 5ss
33.4
-1.9
3.4
48.4
47.3
Minor BPS
54.2
0.21
1.9
76.98
39.8

Associated Gene:

Gene:
FLT3
Ensembl Gene ID:
ENSAPLG00000005989
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041730
140472130 - 140516164
44035
ENSAPLT00000037706
140472130 - 140516164
44035
ENSAPLT00000006238
140472130 - 140516164
44035