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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_140523314_140535860_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
140523314 - 140535860
Intron Length:
12547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTACAT
U12 Branch Point Sequence:
TTTGTCTGAAAT
Flanking Amino Acid:
GGGLDGPRLAIPGIDGGGLA
Intron Amino Acid Position:
152

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.1
0.45
1.1
56.9
42.6
Major BPS
61.4
0.28
1.1
69
36.5
Major PPT
90.4
0.91
0.6
89.7
18.7
Minor 5ss
27.9
-2.5
3
27.6
37.5
Minor BPS
62.5
0.47
1.7
81.8
39.4

Associated Gene:

Gene:
PAN3
Ensembl Gene ID:
ENSAPLG00000006496
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006749
140522860 - 140602665
79806